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Form990-PF electronic filing with approved extension

rds1964
Level 1

I have an electronically accepted 8879 for 990-PF which shows -0- amount due.  I now want to file Original return and correct amount owed is $5400,. This amount will be paid by EFTPS.   When I go to efile, and check the original return, the extension check disappears.  I am afraid that extension will not be electronically transmitted.  It seems that the only alternative is send the extension by PDF attachment.   What am I missing ??

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