My guess is that the program did what you told it to do instead of doing what you wanted it to do. Both LA and MD can be filed all on there own. https://proconnect.intuit.com/community/individual/help/ef-atlas-federal-state-ef-method-standalone-...

You should be able to just go ahead and e-file those two. @Just-Lisa-Now-  should be able to help with that how to for ProSeries.