Part II, Line D of the W-2 worksheet (scroll down) -- should carryover to the Schedule SE computation.  

Note IRC Section 107 about a non-taxable clergy housing allowance.  See https://irc.bloombergtax.com/public/uscode/doc/irc/section_107. Also the IRS has a publication called ministers.pdf.

That’s a 2009 IRS “Audit Techniques Guide” that was “designed specifically for training purposes only. Under no circumstances should the contents be used or cited as sustaining a technical position.” However, it’s useful for knowing what an IRS auditor will be reading if your clergy client’s return is examined. You can find it at

https://www.irs.gov/pub/irs-utl/ministers.pdf

What I find interesting is that it claims that expenses should be pro-rated based on tax-exempt income (like housing allowance, although it uses the quaint “parsonage” term). For example, $10,000 housing allowance and $20,000 salary, only 2/3 of the expenses are allowed. This is somewhat like saying if a $200,000 inheritance is received, the $20,000 tithe to the church is not deductible because it came from exempt income. There is an interesting Tax Court “summary” opinion that does not do such a pro-ration, because IRS did not suggest it, and also seems to give the pastor an $8,000 “office in home” deduction along with a $12,000 parsonage allowance. You can find it at

https://ustaxcourt.gov/UstcInOp/OpinionViewer.aspx?ID=10490

Thank you

Thank you - Very helpful