thank you - 

My greatest concern is that From 1099-Misc are being issued under the LLC EIN and without reporting, there is no way for the IRS to match.

The 1099-MISC should not be issued to the disregarded LLC.  The instructions on the W-9 are quite clear that it should be to the individual's name and ID number.

Spoiler

I'm hiding. 

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@TaxGuyBill wrote:

The 1099-MISC should not be issued to the disregarded LLC.  The instructions on the W-9 are quite clear that it should be to the individual's name and ID number.

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BILL!   Long time no see!   We've missed you around here!   🙂