We have fixes for the identified missing columns and the Client Status: Date Final Return Printed not updating issue that will be available ~ Feb 4th. We are investigating your specific issue of client status in general not updating, sometimes.
Any clues you can provide would be very useful. Specifically - are you doing the exact same thing in the forms that work and the ones that don't? Or maybe is that some statuses are updating and some aren't? Or maybe order matters? And can you confirm - this is specific to 1065, 1120s, and 1120?