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If you've already efiled the return, all you can do to file a superseding return is to paper file it. I'd suggest doing so certified & return receipt.
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Lacerte does not support e-filing superseding returns if the original return was already e-filed from Lacerte. These returns will be recorded as a duplicate return by the Intuit server and rejected with a transmission failure...
Is there a way to e-file a return originally paper-filed and mark it as a superseded return?
